Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00934.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2713
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28


Found at i:301 original size:13 final size:13

Alignment explanation


    Indices: 283--307  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

        273 ATTTCATGAG

                         
        283 GTGAAAAGAAAAC
          1 GTGAAAAGAAAAC

                        
        296 GTGAAAAGAAAA
          1 GTGAAAAGAAAA

        308 AGGAGGCAAC


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.64, C:0.04, G:0.24, T:0.08


Consensus pattern (13 bp):   
GTGAAAAGAAAAC
Done.