Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01808.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2381
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:210 original size:7 final size:7

Alignment explanation


    Indices: 200--224  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

        190 CTTGTCAAGT

                   
        200 TTTGAAA
          1 TTTGAAA

                   
        207 TTTGAAA
          1 TTTGAAA

                   
        214 TTTGAAA
          1 TTTGAAA

                
        221 TTTG
          1 TTTG

        225 GGTTTTTTTA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48


Consensus pattern (7 bp):   
TTTGAAA
Done.