Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00936.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2291
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31


Found at i:2258 original size:44 final size:45

Alignment explanation


    Indices: 2196--2291  Score: 133
    Period size: 44  Copynumber: 2.2  Consensus size: 45

       2186 TCGTATATTC

                                 *    *                 *
       2196 TTTGA-TTCAGTATTTAAACATGTAATAACTGGTG-AAGCCAATG
          1 TTTGAGTTCAGTATTTAAACAAGTAAGAACTGGTGAAAGCCAATA

                     *                             *     
       2239 TTTGAGTTCTGTATTTAAACAAGTAAGAACTGGTGAAAGGCAATA
          1 TTTGAGTTCAGTATTTAAACAAGTAAGAACTGGTGAAAGCCAATA

                    
       2284 TTTGAGTT
          1 TTTGAGTT


Statistics
Matches: 46,  Mismatches: 5, Indels: 2
        0.87            0.09        0.04

Matches are distributed among these distances:
  43    5  0.11
  44   26  0.57
  45   15  0.33

ACGTcount: A:0.34, C:0.09, G:0.21, T:0.35


Consensus pattern (45 bp):   
TTTGAGTTCAGTATTTAAACAAGTAAGAACTGGTGAAAGCCAATA
Done.