Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01820.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2979
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.29


Found at i:186 original size:7 final size:7

Alignment explanation


    Indices: 170--213  Score: 70
    Period size: 7  Copynumber: 6.3  Consensus size: 7

        160 CACTCCACTT

                 * 
        170 CCATATA
          1 CCATAGA

                   
        177 CCATAGA
          1 CCATAGA

                   
        184 CCATAGA
          1 CCATAGA

                   
        191 CCATAGA
          1 CCATAGA

                   
        198 CCATAGA
          1 CCATAGA

               *   
        205 CCAAAGA
          1 CCATAGA

              
        212 CC
          1 CC

        214 CACCTTTCCC


Statistics
Matches: 35,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   7   35  1.00

ACGTcount: A:0.43, C:0.32, G:0.11, T:0.14


Consensus pattern (7 bp):   
CCATAGA

Found at i:614 original size:39 final size:39

Alignment explanation


    Indices: 566--644  Score: 158
    Period size: 39  Copynumber: 2.0  Consensus size: 39

        556 GCACCTCTGT

                                                   
        566 CTTGCAAGCTGCTGACAACTTATCTATTGAAGGGCACCA
          1 CTTGCAAGCTGCTGACAACTTATCTATTGAAGGGCACCA

                                                   
        605 CTTGCAAGCTGCTGACAACTTATCTATTGAAGGGCACCA
          1 CTTGCAAGCTGCTGACAACTTATCTATTGAAGGGCACCA

             
        644 C
          1 C

        645 AAGAAGGATC


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   40  1.00

ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25


Consensus pattern (39 bp):   
CTTGCAAGCTGCTGACAACTTATCTATTGAAGGGCACCA
Done.