Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01832.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2460
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31


Found at i:24 original size:7 final size:7

Alignment explanation


    Indices: 12--41  Score: 51
    Period size: 7  Copynumber: 4.3  Consensus size: 7

          2 CGGACCCTTT

                   
         12 TCCCAAA
          1 TCCCAAA

                   
         19 TCCCAAA
          1 TCCCAAA

             *     
         26 TTCCAAA
          1 TCCCAAA

                   
         33 TCCCAAA
          1 TCCCAAA

              
         40 TC
          1 TC

         42 AGTTCTTATT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20


Consensus pattern (7 bp):   
TCCCAAA

Done.