Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01833.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4850
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:4821 original size:7 final size:7

Alignment explanation


    Indices: 4809--4838  Score: 51
    Period size: 7  Copynumber: 4.3  Consensus size: 7

       4799 CGGACCCTTT

                   
       4809 TCCCAAA
          1 TCCCAAA

                   
       4816 TCCCAAA
          1 TCCCAAA

             *     
       4823 TTCCAAA
          1 TCCCAAA

                   
       4830 TCCCAAA
          1 TCCCAAA

              
       4837 TC
          1 TC

       4839 AGTTCTTATT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   7   21  1.00

ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20


Consensus pattern (7 bp):   
TCCCAAA

Done.