Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01840.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3211
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34


Found at i:2228 original size:17 final size:17

Alignment explanation


    Indices: 2206--2240  Score: 61
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2196 CAAGTGATAC

                             
       2206 TATTGAGGCACTAGGCT
          1 TATTGAGGCACTAGGCT

                      *      
       2223 TATTGAGGCATTAGGCT
          1 TATTGAGGCACTAGGCT

             
       2240 T
          1 T

       2241 CTGTAGATCT


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.23, C:0.14, G:0.29, T:0.34


Consensus pattern (17 bp):   
TATTGAGGCACTAGGCT
Done.