Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01846.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5079
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33


Found at i:2391 original size:27 final size:27

Alignment explanation


    Indices: 2341--2394  Score: 74
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       2331 GAAGCAACTT

                         *     *       
       2341 TCTCACTGTTGTTGGCTTCGTGTTGAA
          1 TCTCACTGTTGTTCGCTTCATGTTGAA

                                        
       2368 TCTCACTGTTGTTCGCTAT-ATGTTGAA
          1 TCTCACTGTTGTTCGCT-TCATGTTGAA

       2395 GTTTGATATT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  27   23  0.96
  28    1  0.04

ACGTcount: A:0.15, C:0.19, G:0.22, T:0.44


Consensus pattern (27 bp):   
TCTCACTGTTGTTCGCTTCATGTTGAA
Done.