Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01848.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4358
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.30


Found at i:4046 original size:5 final size:5

Alignment explanation


    Indices: 4036--4065  Score: 51
    Period size: 5  Copynumber: 6.0  Consensus size: 5

       4026 GCTGGGGGCA

                                          *    
       4036 ATTGT ATTGT ATTGT ATTGT ATTGT GTTGT
          1 ATTGT ATTGT ATTGT ATTGT ATTGT ATTGT

       4066 CTGTACACTA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.17, C:0.00, G:0.23, T:0.60


Consensus pattern (5 bp):   
ATTGT

Done.