Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01854.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3116
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:1415 original size:19 final size:20

Alignment explanation


    Indices: 1378--1417  Score: 64
    Period size: 19  Copynumber: 2.0  Consensus size: 20

       1368 TCAAGGTAGA

                                
       1378 ATATGATTGCTTTGGTCTGC
          1 ATATGATTGCTTTGGTCTGC

                          *     
       1398 ATATGATT-CTTTGTTCTGC
          1 ATATGATTGCTTTGGTCTGC

             
       1417 A
          1 A

       1418 GACTGAAGTC


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19   11  0.58
  20    8  0.42

ACGTcount: A:0.17, C:0.15, G:0.20, T:0.47


Consensus pattern (20 bp):   
ATATGATTGCTTTGGTCTGC
Done.