Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01862.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 595

Length: 993
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29


Found at i:976 original size:24 final size:26

Alignment explanation


    Indices: 943--993  Score: 79
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        933 TGGGGTGTAT

                                      
        943 CTTCTCCTC-T-TATGGTAATTGAAG
          1 CTTCTCCTCTTATATGGTAATTGAAG

                 *                    
        967 CTTCTTCTCTTATATGGTAATTGAAG
          1 CTTCTCCTCTTATATGGTAATTGAAG

             
        993 C
          1 C


Statistics
Matches: 24,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  24    8  0.33
  25    1  0.04
  26   15  0.62

ACGTcount: A:0.22, C:0.20, G:0.16, T:0.43


Consensus pattern (26 bp):   
CTTCTCCTCTTATATGGTAATTGAAG
Done.