Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01863.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1968
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.31


Found at i:160 original size:6 final size:6

Alignment explanation


    Indices: 151--183  Score: 66
    Period size: 6  Copynumber: 5.5  Consensus size: 6

        141 AATAATAATC

                                                  
        151 CAAGAG CAAGAG CAAGAG CAAGAG CAAGAG CAA
          1 CAAGAG CAAGAG CAAGAG CAAGAG CAAGAG CAA

        184 TCTCAGTATC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.52, C:0.18, G:0.30, T:0.00


Consensus pattern (6 bp):   
CAAGAG

Done.