Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01864.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 807

Length: 1346
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30


Found at i:1030 original size:42 final size:42

Alignment explanation


    Indices: 971--1062  Score: 175
    Period size: 42  Copynumber: 2.2  Consensus size: 42

        961 GGGTCTCGCT

                                                      
        971 TCGCCTCGCTACATGGGGTTATTGTCACCTCGCCGACTCTTC
          1 TCGCCTCGCTACATGGGGTTATTGTCACCTCGCCGACTCTTC

                                *                     
       1013 TCGCCTCGCTACATGGGGTTGTTGTCACCTCGCCGACTCTTC
          1 TCGCCTCGCTACATGGGGTTATTGTCACCTCGCCGACTCTTC

                    
       1055 TCGCCTCG
          1 TCGCCTCG

       1063 TACGTACTTG


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  42   49  1.00

ACGTcount: A:0.10, C:0.37, G:0.23, T:0.30


Consensus pattern (42 bp):   
TCGCCTCGCTACATGGGGTTATTGTCACCTCGCCGACTCTTC
Done.