Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01872.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2720
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34


Found at i:552 original size:14 final size:14

Alignment explanation


    Indices: 530--559  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        520 AGTATCGTTC

                *         
        530 AAAATTGATTTTAA
          1 AAAAATGATTTTAA

                          
        544 AAAAATGATTTTAA
          1 AAAAATGATTTTAA

              
        558 AA
          1 AA

        560 GATTATCTGT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37


Consensus pattern (14 bp):   
AAAAATGATTTTAA
Done.