Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01874.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 566

Length: 944
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.31


Found at i:675 original size:9 final size:9

Alignment explanation


    Indices: 661--686  Score: 52
    Period size: 9  Copynumber: 2.9  Consensus size: 9

        651 CTATTTTCAA

                     
        661 CCCAAAAGT
          1 CCCAAAAGT

                     
        670 CCCAAAAGT
          1 CCCAAAAGT

                    
        679 CCCAAAAG
          1 CCCAAAAG

        687 ACGAAAATGT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   17  1.00

ACGTcount: A:0.46, C:0.35, G:0.12, T:0.08


Consensus pattern (9 bp):   
CCCAAAAGT
Done.