Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01876.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2968
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34


Found at i:855 original size:77 final size:77

Alignment explanation


    Indices: 768--996  Score: 325
    Period size: 77  Copynumber: 3.0  Consensus size: 77

        758 TTTTATTCTG

                                  *             *                            
        768 TTCTATCATGTAGATTGGAGTTCACTTTAAAAGGATATGGCCCTAATATGATGAATAATATAGGT
          1 TTCTATCATGTAGATTGGAGTTTACTTTAAAAGGATTTGGCCCTAATATGATGAATAATATAGGT

                  *    *
        833 ATTTAATTTTTT
         66 ATTTAAATTTTC

                                              *                      *    ** 
        845 TTCTATCATGTAGATTGGAGTTTACTTTAAAAGGGTTTGGCCCTAATATGATGAATACTATAAAT
          1 TTCTATCATGTAGATTGGAGTTTACTTTAAAAGGATTTGGCCCTAATATGATGAATAATATAGGT

                        
        910 ATTTAAATTTTC
         66 ATTTAAATTTTC

                    *        *       *              *                   *    
        922 TTCTATCAAGTAGATTGAAGTTTACCTTAAAAGGATTTGGTCCTAATATGAT-ATATAATTTAGG
          1 TTCTATCATGTAGATTGGAGTTTACTTTAAAAGGATTTGGCCCTAATATGATGA-ATAATATAGG

                       
        986 TATTTAAATTT
         65 TATTTAAATTT

        997 CCGAAGCAGA


Statistics
Matches: 134,  Mismatches: 17, Indels: 2
        0.88            0.11        0.01

Matches are distributed among these distances:
  76    1  0.01
  77  133  0.99

ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42


Consensus pattern (77 bp):   
TTCTATCATGTAGATTGGAGTTTACTTTAAAAGGATTTGGCCCTAATATGATGAATAATATAGGT
ATTTAAATTTTC
Done.