Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01882.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3942
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34


Found at i:2426 original size:31 final size:31

Alignment explanation


    Indices: 2383--2445  Score: 117
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       2373 TTTTACTCTT

                                           
       2383 ACATATGACAGTCCTTTTTGTGTTTATGCAA
          1 ACATATGACAGTCCTTTTTGTGTTTATGCAA

                   *                       
       2414 ACATATGCCAGTCCTTTTTGTGTTTATGCAA
          1 ACATATGACAGTCCTTTTTGTGTTTATGCAA

             
       2445 A
          1 A

       2446 AGAATTTTAT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.25, C:0.17, G:0.16, T:0.41


Consensus pattern (31 bp):   
ACATATGACAGTCCTTTTTGTGTTTATGCAA
Done.