Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00090.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 544

Length: 908
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.25


Found at i:809 original size:37 final size:37

Alignment explanation


    Indices: 736--809  Score: 121
    Period size: 37  Copynumber: 2.0  Consensus size: 37

        726 GAAATTAGAT

                                         * *     
        736 ATATATACACACATATATTATTAAGCATATGGATAAG
          1 ATATATACACACATATATTATTAAGCATACGAATAAG

                                     *           
        773 ATATATACACACATATATTATTAAGTATACGAATAAG
          1 ATATATACACACATATATTATTAAGCATACGAATAAG

        810 CTTAGGTTCT


Statistics
Matches: 34,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  37   34  1.00

ACGTcount: A:0.47, C:0.11, G:0.09, T:0.32


Consensus pattern (37 bp):   
ATATATACACACATATATTATTAAGCATACGAATAAG
Done.