Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01902.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2969
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28


Found at i:153 original size:5 final size:5

Alignment explanation


    Indices: 139--169  Score: 53
    Period size: 5  Copynumber: 6.2  Consensus size: 5

        129 TCTCTTTTTT

                        *                        
        139 CTTCC CTTCC GTTCC CTTCC CTTCC CTTCC C
          1 CTTCC CTTCC CTTCC CTTCC CTTCC CTTCC C

        170 CAACTTCAAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.00, C:0.58, G:0.03, T:0.39


Consensus pattern (5 bp):   
CTTCC

Done.