Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01912.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 481

Length: 803
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30


Found at i:698 original size:15 final size:15

Alignment explanation


    Indices: 678--707  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        668 AGCAAAAATC

                   *       
        678 AATAAATTTTCTCTT
          1 AATAAATATTCTCTT

                           
        693 AATAAATATTCTCTT
          1 AATAAATATTCTCTT

        708 TGGGGGCTGG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50


Consensus pattern (15 bp):   
AATAAATATTCTCTT
Done.