Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01913.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 695

Length: 1159
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28


Found at i:1054 original size:15 final size:15

Alignment explanation


    Indices: 1034--1063  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1024 AGCAAAAATC

                   *       
       1034 AATAAATTTTCTCTT
          1 AATAAATATTCTCTT

                           
       1049 AATAAATATTCTCTT
          1 AATAAATATTCTCTT

       1064 TGGGGGCTGG


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.37, C:0.13, G:0.00, T:0.50


Consensus pattern (15 bp):   
AATAAATATTCTCTT
Done.