Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01918.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3645
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30


Found at i:80 original size:15 final size:15

Alignment explanation


    Indices: 60--93  Score: 52
    Period size: 15  Copynumber: 2.3  Consensus size: 15

         50 ATTTTGACAT

                            
         60 TTCTTTCT-TTCTTTC
          1 TTCTTTCTCTTC-TTC

                           
         75 TTCTTTCTCTTCTTC
          1 TTCTTTCTCTTCTTC

                
         90 TTCT
          1 TTCT

         94 GCCATTGAAG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  15   15  0.83
  16    3  0.17

ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71


Consensus pattern (15 bp):   
TTCTTTCTCTTCTTC
Done.