Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01943.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7650
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36


Found at i:1902 original size:3 final size:3

Alignment explanation


    Indices: 1894--1922  Score: 58
    Period size: 3  Copynumber: 9.7  Consensus size: 3

       1884 AATTAACATC

                                                  
       1894 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT

       1923 TTTGCGTCGT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69


Consensus pattern (3 bp):   
TTA

Found at i:5618 original size:22 final size:22

Alignment explanation


    Indices: 5593--5637  Score: 81
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       5583 CTTATTTCTG

                    *             
       5593 TGGGTATTTTGGTTTTCATCTT
          1 TGGGTATTGTGGTTTTCATCTT

                                  
       5615 TGGGTATTGTGGTTTTCATCTT
          1 TGGGTATTGTGGTTTTCATCTT

             
       5637 T
          1 T

       5638 AGAACAAGTT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.09, C:0.09, G:0.24, T:0.58


Consensus pattern (22 bp):   
TGGGTATTGTGGTTTTCATCTT
Done.