Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga04g01943.P9

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5317
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35


Found at i:3285 original size:22 final size:22

Alignment explanation


    Indices: 3260--3304  Score: 81
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       3250 CTTATTTCTG

                    *             
       3260 TGGGTATTTTGGTTTTCATCTT
          1 TGGGTATTGTGGTTTTCATCTT

                                  
       3282 TGGGTATTGTGGTTTTCATCTT
          1 TGGGTATTGTGGTTTTCATCTT

             
       3304 T
          1 T

       3305 AGAACAAGTT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.09, C:0.09, G:0.24, T:0.58


Consensus pattern (22 bp):   
TGGGTATTGTGGTTTTCATCTT
Done.