Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00001.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2470
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28


Found at i:97 original size:6 final size:6

Alignment explanation


    Indices: 51--93  Score: 52
    Period size: 6  Copynumber: 7.3  Consensus size: 6

         41 AATCGTCCTC

                             *                   *      *      
         51 CGCCAT CGCCAT CGCAAT CGCCAT CGCCA- CGTCAT CGTCAT CG
          1 CGCCAT CGCCAT CGCCAT CGCCAT CGCCAT CGCCAT CGCCAT CG

         94 TCATGGCCTT


Statistics
Matches: 33,  Mismatches: 3, Indels: 2
        0.87            0.08        0.05

Matches are distributed among these distances:
   5    4  0.12
   6   29  0.88

ACGTcount: A:0.19, C:0.44, G:0.19, T:0.19


Consensus pattern (6 bp):   
CGCCAT

Found at i:830 original size:6 final size:6

Alignment explanation


    Indices: 819--931  Score: 129
    Period size: 6  Copynumber: 18.8  Consensus size: 6

        809 CAACGATGGG

                            *             *      *      *      *   
        819 TCCGGT TCCGGT TCGGGT TCCGGT TCTGGT TCTGGT TCTGGT TCTGGT
          1 TCCGGT TCCGGT TCCGGT TCCGGT TCCGGT TCCGGT TCCGGT TCCGGT

              *                       *      *                      
        867 TCTGGT TCCGG- TCCTGGT TCCGAT TCCGAT TCCGGT TCCGGT TCCGGT
          1 TCCGGT TCCGGT TCC-GGT TCCGGT TCCGGT TCCGGT TCCGGT TCCGGT

                *              
        915 TCCGAT TCCGGT TCCGG
          1 TCCGGT TCCGGT TCCGG

        932 CTCCAAGAAG


Statistics
Matches: 97,  Mismatches: 8, Indels: 4
        0.89            0.07        0.04

Matches are distributed among these distances:
   5    3  0.03
   6   91  0.94
   7    3  0.03

ACGTcount: A:0.03, C:0.28, G:0.32, T:0.37


Consensus pattern (6 bp):   
TCCGGT

Done.