Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00007.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 894

Length: 1491
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32


Found at i:30 original size:6 final size:6

Alignment explanation


    Indices: 19--74  Score: 76
    Period size: 6  Copynumber: 9.3  Consensus size: 6

          9 GATAATAAAA

                                                 *      *      *   
         19 GCACAG GCACAG GCACAG GCACAG GCACAG GCTCAG GCTCAG GCTCAG
          1 GCACAG GCACAG GCACAG GCACAG GCACAG GCACAG GCACAG GCACAG

              *      
         67 GCTCAG GC
          1 GCACAG GC

         75 TCTACTCAAC


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   49  1.00

ACGTcount: A:0.25, C:0.34, G:0.34, T:0.07


Consensus pattern (6 bp):   
GCACAG

Found at i:42 original size:18 final size:18

Alignment explanation


    Indices: 19--74  Score: 85
    Period size: 18  Copynumber: 3.1  Consensus size: 18

          9 GATAATAAAA

                          *   
         19 GCACAGGCACAGGCACAG
          1 GCACAGGCACAGGCTCAG

                              
         37 GCACAGGCACAGGCTCAG
          1 GCACAGGCACAGGCTCAG

              *     *         
         55 GCTCAGGCTCAGGCTCAG
          1 GCACAGGCACAGGCTCAG

              
         73 GC
          1 GC

         75 TCTACTCAAC


Statistics
Matches: 35,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  18   35  1.00

ACGTcount: A:0.25, C:0.34, G:0.34, T:0.07


Consensus pattern (18 bp):   
GCACAGGCACAGGCTCAG

Done.