Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00007.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1566
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32


Found at i:102 original size:6 final size:6

Alignment explanation


    Indices: 91--149  Score: 82
    Period size: 6  Copynumber: 9.8  Consensus size: 6

         81 ACAATAAACT

                                                    *      *      *
         91 CAGGCA CAGGCA CAGGCA CAGGCA CAGGCA CAGGCT CAGGCT CAGGCT
          1 CAGGCA CAGGCA CAGGCA CAGGCA CAGGCA CAGGCA CAGGCA CAGGCA

                 *      
        139 CAGGCT CAGGC
          1 CAGGCA CAGGC

        150 TCTACTCAAC


Statistics
Matches: 52,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
   6   52  1.00

ACGTcount: A:0.25, C:0.34, G:0.34, T:0.07


Consensus pattern (6 bp):   
CAGGCA

Found at i:151 original size:18 final size:18

Alignment explanation


    Indices: 89--149  Score: 95
    Period size: 18  Copynumber: 3.4  Consensus size: 18

         79 AAACAATAAA

                              
         89 CTCAGGCACAGGCACAGG
          1 CTCAGGCACAGGCACAGG

             *                
        107 CACAGGCACAGGCACAGG
          1 CTCAGGCACAGGCACAGG

                   *     *    
        125 CTCAGGCTCAGGCTCAGG
          1 CTCAGGCACAGGCACAGG

                   
        143 CTCAGGC
          1 CTCAGGC

        150 TCTACTCAAC


Statistics
Matches: 39,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   39  1.00

ACGTcount: A:0.25, C:0.34, G:0.33, T:0.08


Consensus pattern (18 bp):   
CTCAGGCACAGGCACAGG
Done.