Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00955.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2466
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33


Found at i:40 original size:26 final size:26

Alignment explanation


    Indices: 1--99  Score: 162
    Period size: 26  Copynumber: 3.8  Consensus size: 26

                                  *   
          1 TAGGTAAATGTTCCATGATAATAGGT
          1 TAGGTAAATGTTCCATGATAATGGGT

                     *                
         27 TAGGTAAATATTCCATGATAATGGGT
          1 TAGGTAAATGTTCCATGATAATGGGT

                        *             
         53 TAGGTAAATGTTTCATGATAATGGGT
          1 TAGGTAAATGTTCCATGATAATGGGT

                        *        
         79 TAGGTAAATGTTTCATGATAA
          1 TAGGTAAATGTTCCATGATAA

        100 GAATTTCATG


Statistics
Matches: 69,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  26   69  1.00

ACGTcount: A:0.34, C:0.06, G:0.23, T:0.36


Consensus pattern (26 bp):   
TAGGTAAATGTTCCATGATAATGGGT

Done.