Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00023.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3088
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.31


Found at i:2878 original size:48 final size:48

Alignment explanation


    Indices: 2807--2898  Score: 166
    Period size: 48  Copynumber: 1.9  Consensus size: 48

       2797 ACAGATAGGC

                                                   *        
       2807 ACCGGAGAACTAAAAGTGATGATGATCATGATAGGGATAGAAGATGGT
          1 ACCGGAGAACTAAAAGTGATGATGATCATGATAGGGATAAAAGATGGT

                       *                                
       2855 ACCGGAGAACTGAAAGTGATGATGATCATGATAGGGATAAAAGA
          1 ACCGGAGAACTAAAAGTGATGATGATCATGATAGGGATAAAAGA

       2899 AGCCAAGGTG


Statistics
Matches: 42,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  48   42  1.00

ACGTcount: A:0.41, C:0.09, G:0.30, T:0.20


Consensus pattern (48 bp):   
ACCGGAGAACTAAAAGTGATGATGATCATGATAGGGATAAAAGATGGT
Done.