Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00024.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 358

Length: 597
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.30


Found at i:337 original size:21 final size:21

Alignment explanation


    Indices: 313--370  Score: 57
    Period size: 21  Copynumber: 2.8  Consensus size: 21

        303 CGGGGGTGGA

                                  
        313 GGAGCTGCTGCCGCT-CCGGCT
          1 GGAGCTGCTGCCGCTGCC-GCT

                                  
        334 GGAGGC-GCTGCCGCTGCCGCT
          1 GGA-GCTGCTGCCGCTGCCGCT

             *    *    *    
        355 GAAGCTCCTGCAGCTG
          1 GGAGCTGCTGCCGCTG

        371 AGGAGAAAAA


Statistics
Matches: 31,  Mismatches: 3, Indels: 6
        0.77            0.08        0.15

Matches are distributed among these distances:
  20    2  0.06
  21   25  0.81
  22    4  0.13

ACGTcount: A:0.09, C:0.36, G:0.38, T:0.17


Consensus pattern (21 bp):   
GGAGCTGCTGCCGCTGCCGCT
Done.