Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00037.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3404
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:2820 original size:13 final size:13

Alignment explanation


    Indices: 2788--2813  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2778 AGCCATTTTC

                         
       2788 CCATAAAAGTTGA
          1 CCATAAAAGTTGA

                         
       2801 CCATAAAAGTTGA
          1 CCATAAAAGTTGA

       2814 GTATAAATTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23


Consensus pattern (13 bp):   
CCATAAAAGTTGA
Done.