Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00964.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1819
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34


Found at i:616 original size:14 final size:14

Alignment explanation


    Indices: 597--623  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

        587 TGCAGTATGT

                          
        597 TTATGTCTATGTAA
          1 TTATGTCTATGTAA

                         
        611 TTATGTCTATGTA
          1 TTATGTCTATGTA

        624 TCGTACGATC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.26, C:0.07, G:0.15, T:0.52


Consensus pattern (14 bp):   
TTATGTCTATGTAA

Found at i:1043 original size:32 final size:32

Alignment explanation


    Indices: 1006--1071  Score: 132
    Period size: 32  Copynumber: 2.1  Consensus size: 32

        996 GGTATATTTA

                                            
       1006 TCAGGTAGTCATTGTTAATGTGGCAGCCTTTC
          1 TCAGGTAGTCATTGTTAATGTGGCAGCCTTTC

                                            
       1038 TCAGGTAGTCATTGTTAATGTGGCAGCCTTTC
          1 TCAGGTAGTCATTGTTAATGTGGCAGCCTTTC

              
       1070 TC
          1 TC

       1072 CAAACCTTGC


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   34  1.00

ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38


Consensus pattern (32 bp):   
TCAGGTAGTCATTGTTAATGTGGCAGCCTTTC
Done.