Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00060.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1775
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30


Found at i:158 original size:21 final size:21

Alignment explanation


    Indices: 134--175  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        124 CCGCCGTCGG

                                 
        134 AAGGTGAGACATCGACGTCAC
          1 AAGGTGAGACATCGACGTCAC

                    *     *      
        155 AAGGTGAGTCATCGCCGTCAC
          1 AAGGTGAGACATCGACGTCAC

        176 GGACGGTGTC


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.29, C:0.26, G:0.29, T:0.17


Consensus pattern (21 bp):   
AAGGTGAGACATCGACGTCAC
Done.