Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00064.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 759

Length: 1266
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35


Found at i:1202 original size:6 final size:6

Alignment explanation


    Indices: 1193--1221  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

       1183 TTTTTGAATT

                                             
       1193 TGAAAG TGAAAG TGAAAG TGAAAG TGAAA
          1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAA

       1222 TGTTGATTTC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.31, T:0.17


Consensus pattern (6 bp):   
TGAAAG

Done.