Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00072.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 496

Length: 827
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33


Found at i:103 original size:16 final size:17

Alignment explanation


    Indices: 82--115  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

         72 AAGCCAAAAG

                             
         82 CCATCCCCTCCCC-CTC
          1 CCATCCCCTCCCCTCTC

                   *         
         98 CCATCCCTTCCCCTCTC
          1 CCATCCCCTCCCCTCTC

             
        115 C
          1 C

        116 TCCAACTTCC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16   12  0.75
  17    4  0.25

ACGTcount: A:0.06, C:0.71, G:0.00, T:0.24


Consensus pattern (17 bp):   
CCATCCCCTCCCCTCTC
Done.