Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00098.R1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1952
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32


Found at i:1685 original size:6 final size:6

Alignment explanation


    Indices: 1674--1700  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       1664 AACAGTTATA

                                           
       1674 CCAGCT CCAGCT CCAGCT CCAGCT CCA
          1 CCAGCT CCAGCT CCAGCT CCAGCT CCA

       1701 TGTTTTAATA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.19, C:0.52, G:0.15, T:0.15


Consensus pattern (6 bp):   
CCAGCT

Done.