Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00099.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2673
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27


Found at i:401 original size:51 final size:51

Alignment explanation


    Indices: 322--576  Score: 350
    Period size: 51  Copynumber: 5.0  Consensus size: 51

        312 GATGCCGAAC

                    *        *     *        *                  
        322 CAGCAAGGCGGAAACATCGAATCTCAAACATACACTCAGCTACCACAACAG
          1 CAGCAAGGTGGAAACATTGAATCCCAAACATATACTCAGCTACCACAACAG

                       *     **                   *            
        373 CAGCAAGGTGGTAACATCAAATCCCAAACATATACTCAACTACCACAACAG
          1 CAGCAAGGTGGAAACATTGAATCCCAAACATATACTCAGCTACCACAACAG

                               *  *                  *        *
        424 CAGCAAGGTGGAAACATTGGATACCAAACATATACTCAGCTGCCACAACAA
          1 CAGCAAGGTGGAAACATTGAATCCCAAACATATACTCAGCTACCACAACAG

                    *                    *             *       
        475 CAGCAAGGAGGAAACATTGAATCCCAAACTTATACTCAGCTACAACAACAG
          1 CAGCAAGGTGGAAACATTGAATCCCAAACATATACTCAGCTACCACAACAG

            *                                                   
        526 GAGCAAGGTGGAAACATTGAATCCCAAACATATACTCAGCCT-CCACAACAG
          1 CAGCAAGGTGGAAACATTGAATCCCAAACATATACTCAG-CTACCACAACAG

        577 TACTTAATGG


Statistics
Matches: 178,  Mismatches: 25, Indels: 2
        0.87            0.12        0.01

Matches are distributed among these distances:
  51  176  0.99
  52    2  0.01

ACGTcount: A:0.42, C:0.28, G:0.16, T:0.15


Consensus pattern (51 bp):   
CAGCAAGGTGGAAACATTGAATCCCAAACATATACTCAGCTACCACAACAG

Done.