Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00100.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2284
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32


Found at i:50 original size:2 final size:2

Alignment explanation


    Indices: 43--99  Score: 114
    Period size: 2  Copynumber: 28.5  Consensus size: 2

         33 CTTCCACCAT

                                                                          
         43 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                                  
         85 TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC T

        100 TTTCTTTCTT


Statistics
Matches: 55,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   55  1.00

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (2 bp):   
TC

Done.