Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00112.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 243

Length: 406
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23


Found at i:162 original size:15 final size:15

Alignment explanation


    Indices: 142--178  Score: 74
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        132 GCTGATCATC

                           
        142 CTCCTCCAGGCCATG
          1 CTCCTCCAGGCCATG

                           
        157 CTCCTCCAGGCCATG
          1 CTCCTCCAGGCCATG

                   
        172 CTCCTCC
          1 CTCCTCC

        179 TCCTGGACCA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   22  1.00

ACGTcount: A:0.11, C:0.51, G:0.16, T:0.22


Consensus pattern (15 bp):   
CTCCTCCAGGCCATG

Found at i:163 original size:18 final size:17

Alignment explanation


    Indices: 140--181  Score: 61
    Period size: 15  Copynumber: 2.5  Consensus size: 17

        130 ATGCTGATCA

                             
        140 TCCTCCTCCAGGCCATG
          1 TCCTCCTCCAGGCCATG

                             
        157 --CTCCTCCAGGCCATG
          1 TCCTCCTCCAGGCCATG

                      
        172 CTCCTCCTCC
          1 -TCCTCCTCC

        182 TGGACCAGGC


Statistics
Matches: 22,  Mismatches: 0, Indels: 5
        0.81            0.00        0.19

Matches are distributed among these distances:
  15   15  0.68
  18    7  0.32

ACGTcount: A:0.10, C:0.52, G:0.14, T:0.24


Consensus pattern (17 bp):   
TCCTCCTCCAGGCCATG
Done.