Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00972.P6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5781
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:791 original size:2 final size:2

Alignment explanation


    Indices: 784--817  Score: 59
    Period size: 2  Copynumber: 16.5  Consensus size: 2

        774 TGGAAAATAG

                                                              
        784 AT AT AT AT AT AT AT AT AT AT AT AT AT AT CAT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT A

        818 AAAAACTAAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2   29  0.94
   3    2  0.06

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.