Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00973.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9731
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:6772 original size:28 final size:28

Alignment explanation


    Indices: 6740--6794  Score: 110
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       6730 GCGTAGATCA

                                        
       6740 CGAAATTACCCCTAAAGAGCAAAATTAT
          1 CGAAATTACCCCTAAAGAGCAAAATTAT

                                       
       6768 CGAAATTACCCCTAAAGAGCAAAATTA
          1 CGAAATTACCCCTAAAGAGCAAAATTA

       6795 CCGATATACC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.47, C:0.22, G:0.11, T:0.20


Consensus pattern (28 bp):   
CGAAATTACCCCTAAAGAGCAAAATTAT
Done.