Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00173.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2292
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30


Found at i:619 original size:14 final size:16

Alignment explanation


    Indices: 600--632  Score: 52
    Period size: 14  Copynumber: 2.2  Consensus size: 16

        590 CCATGTTTCG

                            
        600 TATTCTTT-A-CTTAT
          1 TATTCTTTAAGCTTAT

                            
        614 TATTCTTTAAGCTTAT
          1 TATTCTTTAAGCTTAT

               
        630 TAT
          1 TAT

        633 GTGATTTGTT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  14    8  0.47
  15    1  0.06
  16    8  0.47

ACGTcount: A:0.24, C:0.12, G:0.03, T:0.61


Consensus pattern (16 bp):   
TATTCTTTAAGCTTAT
Done.