Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00175.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 465

Length: 775
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28


Found at i:562 original size:4 final size:4

Alignment explanation


    Indices: 553--579  Score: 54
    Period size: 4  Copynumber: 6.8  Consensus size: 4

        543 CAAATAACAT

                                             
        553 ATAG ATAG ATAG ATAG ATAG ATAG ATA
          1 ATAG ATAG ATAG ATAG ATAG ATAG ATA

        580 ACCAAAGGTG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.22, T:0.26


Consensus pattern (4 bp):   
ATAG

Done.