Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00177.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 468

Length: 780
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.30


Found at i:96 original size:41 final size:41

Alignment explanation


    Indices: 34--124  Score: 173
    Period size: 41  Copynumber: 2.2  Consensus size: 41

         24 ATCAAACTCT

                *                                    
         34 CCACCCCCAACACCTGAGGCACAGTCCCTTTTGTATCTAAG
          1 CCACTCCCAACACCTGAGGCACAGTCCCTTTTGTATCTAAG

                                                     
         75 CCACTCCCAACACCTGAGGCACAGTCCCTTTTGTATCTAAG
          1 CCACTCCCAACACCTGAGGCACAGTCCCTTTTGTATCTAAG

                     
        116 CCACTCCCA
          1 CCACTCCCA

        125 TACCCCATTT


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  41   49  1.00

ACGTcount: A:0.24, C:0.41, G:0.13, T:0.22


Consensus pattern (41 bp):   
CCACTCCCAACACCTGAGGCACAGTCCCTTTTGTATCTAAG
Done.