Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00178.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 994

Length: 1658
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27


Found at i:1628 original size:3 final size:3

Alignment explanation


    Indices: 1620--1644  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

       1610 TTTTTTAAAA

                                             
       1620 AAG AAG AAG AAG AAG AAG AAG AAG A
          1 AAG AAG AAG AAG AAG AAG AAG AAG A

       1645 TATTGTAAGC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00


Consensus pattern (3 bp):   
AAG

Done.