Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00973.P3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7496
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:6772 original size:28 final size:28

Alignment explanation


    Indices: 6740--6798  Score: 118
    Period size: 28  Copynumber: 2.1  Consensus size: 28

       6730 GCGTAGATCA

                                        
       6740 CGAAATTACCCCTAAAGAGCAAAATTAC
          1 CGAAATTACCCCTAAAGAGCAAAATTAC

                                        
       6768 CGAAATTACCCCTAAAGAGCAAAATTAC
          1 CGAAATTACCCCTAAAGAGCAAAATTAC

               
       6796 CGA
          1 CGA

       6799 TATACCCTAG


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   31  1.00

ACGTcount: A:0.46, C:0.25, G:0.12, T:0.17


Consensus pattern (28 bp):   
CGAAATTACCCCTAAAGAGCAAAATTAC

Found at i:7191 original size:31 final size:31

Alignment explanation


    Indices: 7141--7228  Score: 92
    Period size: 31  Copynumber: 2.8  Consensus size: 31

       7131 TATGGGCCAC

                    *            *           
       7141 ACTGTTATGT-AAAAGGGGCTAAGGCCT-TGCT
          1 ACTGTTATCTGAAAA-GGGCTTAGGCCTATG-T

                                  *         
       7172 ACTG-TATTCTGAAAAGGGCTTCGGCCTATGT
          1 ACTGTTA-TCTGAAAAGGGCTTAGGCCTATGT

                         *            
       7203 ACTGTTATCTGAATAGGGCTTAGGCC
          1 ACTGTTATCTGAAAAGGGCTTAGGCC

       7229 CAATGGGCTC


Statistics
Matches: 48,  Mismatches: 5, Indels: 8
        0.79            0.08        0.13

Matches are distributed among these distances:
  30    2  0.04
  31   38  0.79
  32    8  0.17

ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31


Consensus pattern (31 bp):   
ACTGTTATCTGAAAAGGGCTTAGGCCTATGT
Done.