Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00180.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 570

Length: 950
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37


Found at i:752 original size:13 final size:12

Alignment explanation


    Indices: 712--753  Score: 50
    Period size: 12  Copynumber: 3.4  Consensus size: 12

        702 ATTTCTTTTA

                *       
        712 TTTTCTTGAATT
          1 TTTTATTGAATT

                         
        724 TTTTATAT-AATT
          1 TTTTAT-TGAATT

                        
        736 TTTTATTGAATT
          1 TTTTATTGAATT

                  
        748 CTTTTA
          1 -TTTTA

        754 AAAATACATT


Statistics
Matches: 26,  Mismatches: 1, Indels: 5
        0.81            0.03        0.16

Matches are distributed among these distances:
  11    1  0.04
  12   19  0.73
  13    6  0.23

ACGTcount: A:0.24, C:0.05, G:0.05, T:0.67


Consensus pattern (12 bp):   
TTTTATTGAATT
Done.