Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00253.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2421
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:2328 original size:27 final size:27

Alignment explanation


    Indices: 2298--2352  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       2288 AAGTAGGATG

                                       
       2298 ATGGAATGTGTTGTATCTTGAATTCTA
          1 ATGGAATGTGTTGTATCTTGAATTCTA

                                       
       2325 ATGGAATGTGTTGTATCTTGAATTCTA
          1 ATGGAATGTGTTGTATCTTGAATTCTA

             
       2352 A
          1 A

       2353 CTGATAATTC


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.27, C:0.07, G:0.22, T:0.44


Consensus pattern (27 bp):   
ATGGAATGTGTTGTATCTTGAATTCTA
Done.