Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00257.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2148
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:159 original size:10 final size:10

Alignment explanation


    Indices: 144--171  Score: 56
    Period size: 10  Copynumber: 2.8  Consensus size: 10

        134 CACGGGGAGA

                      
        144 GAGAGAGAGG
          1 GAGAGAGAGG

                      
        154 GAGAGAGAGG
          1 GAGAGAGAGG

                    
        164 GAGAGAGA
          1 GAGAGAGA

        172 AGAAAGAGAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   18  1.00

ACGTcount: A:0.43, C:0.00, G:0.57, T:0.00


Consensus pattern (10 bp):   
GAGAGAGAGG
Done.