Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g00263.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1852
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30


Found at i:1635 original size:288 final size:288

Alignment explanation


    Indices: 1101--1652  Score: 644
    Period size: 288  Copynumber: 1.9  Consensus size: 288

       1091 AAAAGGAACC

                                                  *   **            *        
       1101 GGAAGAAGCTGGTGCGTTGCTTCTAGCCAGGCTTCAAATTCGGCTTTACAGAATGCGCTAGATTG
          1 GGAAGAAGCTGGTGCGTTGCTTCTAGCCAGGCTTCAAAGTCGAATTTACAGAATGCACTAGATTG

               *  *           *             ***        *     *        *      
       1166 GGCTTGTGGTCCGGGAAAGGCGGATTGCTCCGCTCTTCAGCCTGACCAGCAATGTTTTGAACCAA
         66 GGCATGCGGTCCGGGAAAAGCGGATTGCTCCGAAATTCAGCCTAACCAGAAATGTTTTCAACCAA

                    *  *             *                                       
       1231 ATAATCTAGTTTCTCATGCCTCTTTTGCATTCAACAATTACTACCAGAAAAATGGGCTCACTGAT
        131 ATAATCTACTTGCTCATGCCTCTTTCGCATTCAACAATTACTACCAGAAAAATGGGCTCACTGAT

                          **      *  **   **                        * *      
       1296 CAAGCATGCAGTTTTGGAGGAACTGGGATCGTAGTCTATAACGACCCTAGCTATGGTAGTTGCAT
        196 CAAGCATGCAGTTTCCGAGGAAATGCAATCAAAGTCTATAACGACCCTAGCTATGGGAATTGCAT

                                        
       1361 CTATAATGTAAAAAGTAGGGATCCGAAA
        261 CTATAATGTAAAAAGTAGGGATCCGAAA

                                       *        * *                   *      
       1389 GGAAGAA-CTTGGTGCGTTGCTTCTAGTCAGGCTTCTAGGTCGAATTTACAGAATGCATTAGATT
          1 GGAAGAAGC-TGGTGCGTTGCTTCTAGCCAGGCTTCAAAGTCGAATTTACAGAATGCACTAGATT

                         *        *     *  *                             *   
       1453 GGGCATGCGGTCCTGGAAAAGCTGATTGTTCGGAAATTCAGCCTAACCAGAAATGTTTTCAGCCA
         65 GGGCATGCGGTCCGGGAAAAGCGGATTGCTCCGAAATTCAGCCTAACCAGAAATGTTTTCAACCA

            *   *                        *                                   
       1518 GATACTCTACTTGCTCATGCCTCTTTCGCCTTCAACAATTACTACCAGAAAAATGGTGCT-ACTG
        130 AATAATCTACTTGCTCATGCCTCTTTCGCATTCAACAATTACTACCAGAAAAATGG-GCTCACTG

                 ** *           *                      * *  *                
       1582 ATGC-TTCCTGCAGTTTCCGTGGAAATGCAATCAAAGT-TGATCAGGATCCTAGCTATGGGAATT
        194 AT-CAAGCATGCAGTTTCCGAGGAAATGCAATCAAAGTCT-ATAACGACCCTAGCTATGGGAATT

                    
       1645 GCATCTAT
        257 GCATCTAT

       1653 CACTAAGAGG


Statistics
Matches: 216,  Mismatches: 44, Indels: 8
        0.81            0.16        0.03

Matches are distributed among these distances:
 287    2  0.01
 288  210  0.97
 289    4  0.02

ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29


Consensus pattern (288 bp):   
GGAAGAAGCTGGTGCGTTGCTTCTAGCCAGGCTTCAAAGTCGAATTTACAGAATGCACTAGATTG
GGCATGCGGTCCGGGAAAAGCGGATTGCTCCGAAATTCAGCCTAACCAGAAATGTTTTCAACCAA
ATAATCTACTTGCTCATGCCTCTTTCGCATTCAACAATTACTACCAGAAAAATGGGCTCACTGAT
CAAGCATGCAGTTTCCGAGGAAATGCAATCAAAGTCTATAACGACCCTAGCTATGGGAATTGCAT
CTATAATGTAAAAAGTAGGGATCCGAAA
Done.